Publications
2025
Nothing
Post-doc (8)
8 Jae-Won Cho#, Jingyi Cao and Martin Hemberg, Single-cell splicing QTL analysis in pancreatic islets, Frontiers in Bioinformatics, 202509
7 Jimmy Tsz Hang Lee, Sam N. Barnett, Kenny Roberts, Helen Ashwin, Luke Milross, Jae-Won Cho, …, Andrew J. Fisher, Martin Hemberg, Michela Noseda, Omer Ali Bayraktar, Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19, Nature Communications, 202503
6 Carina Shiau, Jingyi Cao, Dennis Gong, Mark T Gregory, Nicholas J Caldwell, Xunqin Yin, Jae-Won Cho, Peter L Wang, Jennifer Su, Steven Wang, Jason W Reeves, Tae Kyung Kim, Youngmi Kim, Jimmy A Guo, Nicole A Lester, Jung Woo Bae, Ryan Zhao, Nathan Schurman, Jamie L Barth, Maria L Ganci, Ralph Weissleder, Tyler Jacks, Motaz Qadan, Theodore S Hong, Jennifer Y Wo, Hannah Roberts, Joseph M Beechem, Carlos Fernandez-del Castillo, Mari Mino-Kenudson, David T Ting, Martin Hemberg, William L Hwang, Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment, Nature Genetics, 202409
5 Junha Cha, Da Hee Kim, Gamin Kim, Jae-Won Cho, Euijeong Sung, Seungbyn Baek, Min Hee Hong, Chang Gon Kim, Nam Suk Sim, Hyun Jun Hong, Jung Eun Lee, Martin Hemberg, Seyeon Park, Sun Ock Yoon, Sang-Jun Ha, Yoon Woo Koh, Hye Ryun Kim, Insuk Lee, Single-cell analysis reveals cellular and molecular factors counteracting HPVpositive oropharyngeal cancer immunotherapy outcomes, Journal for Immunotherapy of Cancer, 202406
4 Jae-Won Cho#, Jingyi Cao, Martin Hemberg, Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution, Genome Biology, 202403
3 Yufei Wang#, Jae-Won Cho#, Gabriella Kastrunes, Alicia Buck, Cecile Razimbaud, Aedin C Culhane, Jiusong Sun, David A Braun, Toni K Choueiri, Catherine J Wu, Kristen Jones, Quang-De Nguyen, Zhu Zhu, Kevin Wei, Quan Zhu, Sabina Signoretti, Gordon J Freeman, Martin Hemberg, Wayne A Marasco, Immune Restoring CAR-T Cells Display Antitumor Activity and Reverse Immunosuppressive TME in a Humanized ccRCC Mouse Model, iScience, 202402
2 Junha Cha*, Jiwon Yu, Jae-Won Cho, Martin Hemberg, Insuk Lee, scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes, Nucleic Acids Research, 202301
1 Pilar Baldominos, Alex Barbera-Mourelle, Olga Barreiro, Yu Huang, Andrew Wight, Jae-Won Cho, Xi Zhao, Guillem Estivill, Isam Adam, Xavier Sanchez, Shannon McCarthy, Julien Schaller, Zara Khan, Albert Ruzo, Ricardo Pastorello, Edward T Richardson, Deborah Dillon, Paula Montero-Llopis, Romualdo Barroso-Sousa, Juliet Forman, Sachet A Shukla, Sara M Tolaney, Elizabeth A Mittendorf, Ulrich H von Andrian, Kai W Wucherpfennig, Martin Hemberg, Judith Agudo, Quiescent cancer cells resist T cell attack by forming an immunosuppressive niche, Cell, 202205
PhD (7)
7 Jae-Won Cho#, Hyo Sup Shim, Chang Young Lee, Seong Yong Park, Min Hee Hong, Insuk Lee, Hye Ryun Kim, The importance of enhancer methylation for epigenetic regulation of tumorigenesis in squamous lung cancer, Experimental & Molecular Medicine, 202201
6 Jae-Won Cho#, Seyeon Park, Gamin Kim, Heonjong Han, Hyo Sup Shim, Sunhye Shin, Yong-Soo Bae, Seong Yong Park, Sang-Jun Ha, Insuk Lee & Hye Ryun Kim, Dysregulation of TFH-B-TRM lymphocyte cooperation is associated with unfavorable anti-PD-1 responses in EGFR-mutant lung cancer, Nature Communications, 202110
5 Jae-Won Cho#, Jimin Son#, Sang-Jun Ha, Insuk Lee, Systems biology analysis identifies TNFRSF9 as a functional marker of tumor-infiltrating regulatory T-cell enabling clinical outcome prediction in lung cancer, Computational and Structural Biotechnology Journal, 202101
4 Jimin Son#, Jae-Won Cho#, Hyo Jin Park, Jihyun Moon, Seyeon Park, Hoyoung Lee, Jeewon Lee, Ga min Kim, Su-Myeong Park, Sergio A. Lira, Andrew N. Mckenzie, Hye Young Kim, Cheol Yong Choi, Yong Taik Lim, Seong Yong Park, Hye Ryun Kim, Su-Hyung Park, Eui-Cheol Shin, Insuk Lee & Sang-Jun Ha, Tumor-Infiltrating Regulatory T Cell Accumulation in the Tumor Microenvironment is Mediated by IL33/ST2 Signaling, Cancer Immunology Research, 202011
3 Jae-Won Cho#, Min Hee Hong, Sang-Jun Ha, Young-Joon Kim, Byoung Chul Cho, Insuk Lee, and Hye Ryun Kim, Genome-wide identification of differentially methylated promoters and enhancers associated with response to anti-PD-1 therapy in non-small cell lung cancer, Experimental & Molecular Medicine, 202009
2 Kyungsoo Kim, Seyeon Park, Seong Yong Park, Gamin Kim, Su Myeong Park, Jae-Won Cho, Da Hee Kim, Young Min Park, Yoon Woo Koh, Hye Ryun Kim, Sang-Jun Ha and Insuk Lee, Single-cell transcriptome analysis reveals TOX as a promoting factor for T cell exhaustion and a predictor for anti-PD-1 responses in human cancer, Genome Medicine, 202002
1 Han H, Jae-Won Cho, Lee S, Yun A, Kim H, Bae D, Yang S, Kim CY, Lee M, Kim E, Lee S, Kang B, Jeong D, Kim Y, Jeon HN, Jung H, Nam S, Chung M, Kim JH, Lee I, TRRUST v2: An expanded reference database of human and mouse transcriptional regulatory interactions, Nucleic Acids Research, 201801
Master (3)
3 Kyu Hyung Park*, Jae-Won Cho, Tae-Woo Kim, Hideyuki Shimizu, Kazumi Nakao, Masahiko Iyoda, and Dongho Kim**, Defining Cyclic Acyclic Exciton Transition at the Single-Molecule Level: Size-Dependent Conformational Heterogeneity and Exciton Delocalization in Ethynylene-Bridged Cyclic Oligothiophenes, The Journal of Physical Chemistry Letters, 201603
2 Tae-Woo Kim*, Woojae Kim, Kyu Hyung Park, Pyosang Kim, Jae-Won Cho, Hideyuki Shimizu, Masahiko Iyoda, and Dongho Kim**, Chain-Length-Dependent Exciton Dynamics in Linear Oligothiophenes Probed Using Ensemble and Single-Molecule Spectroscopy, The Journal of Physical Chemistry Letters, 201601
1 Jae-Won Cho*, Hyejin Yoo, Ji-Eun Lee, Qifan Yan, Dahui Zhao, and Dongho Kim**, Intramolecular Interactions of Highly π-Conjugated Perylenediimide Oligomers Probed by Single-Molecule Spectroscopy, The Journal of Physical Chemistry Letters, 201410